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The identification of signals of very recent positive selection provides information about the adaptation of modern humans to local conditions. We report here on a genome-wide scan for signals of very recent positive selection in favor of variants that have not yet reached fixation. We describe a new analytical method for scanning single nucleotide polymorphism (SNP) data for signals of recent selection, and apply this to data from the International HapMap Project. In all three continental groups we find widespread signals of recent positive selection. Most signals are region-specific, though a significant excess are shared across groups. Contrary to some earlier low resolution studies that suggested a paucity of recent selection in sub-Saharan Africans, we find that by some measures our strongest signals of selection are from the Yoruba population. Finally, since these signals indicate the existence of genetic variants that have substantially different fitnesses, they must indicate loci that are the source of significant phenotypic variation. Though the relevant phenotypes are generally not known, such loci should be of particular interest in mapping studies of complex traits. For this purpose we have developed a set of SNPs that can be used to tag the strongest approximately 250 signals of recent selection in each population.
news.thinkgene.comTop 10 genomic news as voted by the genomics community. Week of 3 Nov 08Do it yourself: searching for evolution’s signature in 53 human populationsThe CCR5 Mutation and a Potential Cure for AIDSPLoS Biology - A Map of Recent Positive...
A few months ago I was enjoying a pleasant evening with a few friends when the topic of evolution came up, more specifically the work of Stephen Jay Gould. One of the people in the room asked "Who's he?" and before I could respond someone else did, commenting...
Over at The Corner they are discussing an interview series with Tom Wolfe. Wolfe claimed that Charles Darwin was a plagiarist. Derb pushed back. Since they keep talking about the interview, I decided to watch. A few notes....Wolfe says that Darwin was an obscure...
A common SNP of MCPH1 is associated with cranial volume variation in Chinese population:Microcephaly (MCPH) genes are informative in understanding the genetics and evolution of human brain volume. MCPH1 and abnormal spindle-like MCPH associated (ASPM) are the...
I've criticized economists for being a bit cavalier about nutritional basics before. A comment below points me to this working paper, Agricultural Specialization and Health in Ancient and Medieval Europe:It has been argued that protein-rich milk and beef are...
I saw this paper in Nature Genetics, Disruption of P2RY5, an orphan G protein-coupled receptor, underlies autosomal recessive woolly hair:The genetic determinants of hair texture in humans are largely unknown. Several human syndromes exist in which woolly hair...
I've been blogging the HERC2/OCA2 story a fair amount. It seems this genomic region is the locus of main effect for variation of eye color in Europeans, in particular blue vs. non-blue eyes. But I also pointed out that this locus has also been connected to...
This post is more of a personal note...here are three papers that are really cool must reads:Voight BF, Kudaravalli S, Wen X, Pritchard JK (2006) A Map of Recent Positive Selection in the Human Genome. PLoS Biol 4(3): e72 doi:10.1371/journal.pbio.0040072...
In my previous post I highlighted the possibility that extremely light skin might have evolved in Europeans relatively recently due to selection for Vitamin D production in the context of a nutritional deficiency prompted by the shift from a hunter-gatherer...
PLoS One has a new article on detecting recent natural selection in the human genome. As opposed to previous studies mentioned on this site [1][2], this study looks for fixed differences between populations, rather than those on their way to fixation. This...
It was the article by Nicolas Wade in the New York Times ("Still Evolving, Human Genes Tell New Story") that alerted me to the new article in PLoS Biology by Voight et al. ("A Map of Recent Positive Selection in the Human Genome", from Jonathan Pritchard's...
There has been surprisingly little outrage in the internets over Steve Hsu's argument that the concept of "race" has a biological basis. But still, it might be worth going over in a bit more detail the evidence supporting him, so that's what this post will...
The new issue of Human Genetics has three articles that may interest GNXP readers. A study on the genetics of height looked at two groups of normal Japanese males (i.e., no cases of Marfan Syndrome), one tall (+2 SD; N =219) and one average (+/- 1 SD; N = 209)....
At the end of the previous installment I began examining Sanford's arguments as to why "random mutations are never good". As we saw, most of these ended up being among some of oldest and most discredited creationist arguments around. But he also had a new (at...
The abstract for this article by Adam Eyre-Walker (whose work I've quibbled with before) caught my eye:The role of positive darwinian selection in evolution at the molecular level has been keenly debated for many years, with little resolution. However, a recent...
In September of last year, Bruce Lahn's group at the University of Chicago published two articles in Science arguing that two genes which, when mutated, cause microencephaly had recently been (and possibly currently are) under selection in humans. The phenotype...
At my other weblog I just posted something about the possibility for fitness benefits for those who are heterozygotes for the GJB2 locus. For one particular allele GJB2 causes deafness when homozygous. About 1 out of 35 southern Europeans, 1 out of 80 northern...
Kosuke M. Teshima, Graham Coop and Molly Przeworski from the Department of Human Genetics at University of Chicago, home to both the Pritchard and Lahn labs, present an analysis of the effectiveness of empirical scans for selective sweeps, such as those from...
Nick Wade has a new article out, Still Evolving, Human Genes Tell New Story. Nothing that should surprise, selection happens. I'm a little surprised that Spencer Wells is putting in so much face time in Wade's article, to me this suggests that he might be moving...
No big surprise here, but a new paper in PLOS-Biology did a search for signs of positive selection in the human genome and turned up several genes in different populations that have been selected for very recently. Providing the strongest evidence yet that...
Nick Wade in The New York Times has a piece out titled Still Evolving, Human Genes Tell New Story, based on a paper published today in PLOS, A Map of Recent Positive Selection in the Human Genome. This paper is an extension of the research project that emerges...
This paper is rather timely considering I just finished reviewing methods for detecting natural selection. Jonathan Pritchard's group has scanned SNP data from three populations (Europeans, East Asians, and Nigerians) for signatures of positive natural selection....
Source: New York Times Providing the strongest evidence yet that humans are still evolving, researchers have detected some 700 regions of the human genome where genes appear to have been reshaped by natural selection, a principal force of evolution, within...
This months PLoS Genetics has a review on the moleular "footprint" of balancing selection. It's (of course) open access, so click on through. It's easy to forget, in this time when the detection of selective sweeps gets extensive publicity, that there are other...
If you liked RPM's series on detecting natural selection over at Evolgen, you'll enjoy I review I came across from late last year. It's called Molecular Signatures of Natural Selection, by Ramus Nielson. From the abstract: This review provides a nonmathematical...
While I tend to fixate on the human health-related effects of genomics, the ramifications obviously go far beyond my little domain. One such area that is being greatly affected is the detection of natural selection. If you read RPM's series on the subject,...
Yet another study on positive selection in modern humans; you can find many many more by searching for "recent selection" or "positive selection" via the site search on the right sidebar.The findings are reported in PLoS Biology (free text). Nicholas Wade also...
PloS Biology published "A Map of Recent Positive Selection in the Human Genome" today. This article is a thorough look at roughly 700 regions of the human genome, some of "which [are] responsible for the senses of taste and smell, digestion, bone structure,...

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