
posted to
Think Gene on
Tue 11th Nov 08news.thinkgene.comTop 10 genomic news as voted by the genomics community. Week of 3 Nov 08Do it yourself: searching for evolution’s signature in 53 human populationsThe CCR5 Mutation and a Potential Cure for AIDSPLoS Biology - A Map of Recent Positive...

posted to
Laelaps on
Mon 30th Jun 08A few months ago I was enjoying a pleasant evening with a few friends when the topic of evolution came up, more specifically the work of Stephen Jay Gould. One of the people in the room asked "Who's he?" and before I could respond someone else did, commenting...

posted to
Gene Expression on
Thu 8th May 08Over at The Corner they are discussing an interview series with Tom Wolfe. Wolfe claimed that Charles Darwin was a plagiarist. Derb pushed back. Since they keep talking about the interview, I decided to watch. A few notes....Wolfe says that Darwin was an obscure...

posted to
Gene Expression on
Thu 17th Apr 08A common SNP of MCPH1 is associated with cranial volume variation in Chinese population:Microcephaly (MCPH) genes are informative in understanding the genetics and evolution of human brain volume. MCPH1 and abnormal spindle-like MCPH associated (ASPM) are the...

posted to
Gene Expression on
Thu 10th Apr 08I've criticized economists for being a bit cavalier about nutritional basics before. A comment below points me to this working paper, Agricultural Specialization and Health in Ancient and Medieval Europe:It has been argued that protein-rich milk and beef are...

posted to
Gene Expression on
Wed 27th Feb 08I saw this paper in Nature Genetics, Disruption of P2RY5, an orphan G protein-coupled receptor, underlies autosomal recessive woolly hair:The genetic determinants of hair texture in humans are largely unknown. Several human syndromes exist in which woolly hair...

posted to
Gene Expression on
Sat 2nd Feb 08I've been blogging the HERC2/OCA2 story a fair amount. It seems this genomic region is the locus of main effect for variation of eye color in Europeans, in particular blue vs. non-blue eyes. But I also pointed out that this locus has also been connected to...

linked to by 1 posted to
Gene Expression on
Sat 29th Sep 07This post is more of a personal note...here are three papers that are really cool must reads:Voight BF, Kudaravalli S, Wen X, Pritchard JK (2006) A Map of Recent Positive Selection in the Human Genome. PLoS Biol 4(3): e72 doi:10.1371/journal.pbio.0040072...

posted to
Gene Expression on
Mon 9th Jul 07In my previous post I highlighted the possibility that extremely light skin might have evolved in Europeans relatively recently due to selection for Vitamin D production in the context of a nutritional deficiency prompted by the shift from a hunter-gatherer...

linked to by 1 posted to
Gene Expression on
Wed 28th Mar 07PLoS One has a new article on detecting recent natural selection in the human genome. As opposed to previous studies mentioned on this site [1][2], this study looks for fixed differences between populations, rather than those on their way to fixation. This...

posted to
On Genetics on
Wed 8th Mar 06It was the article by Nicolas Wade in the New York Times ("Still Evolving, Human Genes Tell New Story") that alerted me to the new article in PLoS Biology by Voight et al. ("A Map of Recent Positive Selection in the Human Genome", from Jonathan Pritchard's...

linked to by 2 posted to
Gene Expression on
Mon 15th Jan 07There has been surprisingly little outrage in the internets over Steve Hsu's argument that the concept of "race" has a biological basis. But still, it might be worth going over in a bit more detail the evidence supporting him, so that's what this post will...

posted to
Gene Expression on
Sun 31st Dec 06The new issue of Human Genetics has three articles that may interest GNXP readers. A study on the genetics of height looked at two groups of normal Japanese males (i.e., no cases of Marfan Syndrome), one tall (+2 SD; N =219) and one average (+/- 1 SD; N = 209)....

posted to
Newton's Binomium on
Tue 10th Oct 06At the end of the previous installment I began examining Sanford's arguments as to why "random mutations are never good". As we saw, most of these ended up being among some of oldest and most discredited creationist arguments around. But he also had a new (at...

linked to by 2 posted to
Gene Expression on
Sun 17th Sep 06The abstract for this article by Adam Eyre-Walker (whose work I've quibbled with before) caught my eye:The role of positive darwinian selection in evolution at the molecular level has been keenly debated for many years, with little resolution. However, a recent...

linked to by 1 posted to
Gene Expression on
Tue 18th Jul 06In September of last year, Bruce Lahn's group at the University of Chicago published two articles in Science arguing that two genes which, when mutated, cause microencephaly had recently been (and possibly currently are) under selection in humans. The phenotype...

posted to
Gene Expression on
Tue 9th May 06At my other weblog I just posted something about the possibility for fitness benefits for those who are heterozygotes for the GJB2 locus. For one particular allele GJB2 causes deafness when homozygous. About 1 out of 35 southern Europeans, 1 out of 80 northern...

posted to
Gene Expression on
Thu 11th May 06Kosuke M. Teshima, Graham Coop and Molly Przeworski from the Department of Human Genetics at University of Chicago, home to both the Pritchard and Lahn labs, present an analysis of the effectiveness of empirical scans for selective sweeps, such as those from...

posted to
Gene Expression on
Tue 7th Mar 06Nick Wade has a new article out, Still Evolving, Human Genes Tell New Story. Nothing that should surprise, selection happens. I'm a little surprised that Spencer Wells is putting in so much face time in Wade's article, to me this suggests that he might be moving...

posted to
Universal Acid on
Tue 7th Mar 06No big surprise here, but a new paper in PLOS-Biology did a search for signs of positive selection in the human genome and turned up several genes in different populations that have been selected for very recently. Providing the strongest evidence yet that...

posted to
Gene Expression on
Tue 7th Mar 06Nick Wade in The New York Times has a piece out titled Still Evolving, Human Genes Tell New Story, based on a paper published today in PLOS, A Map of Recent Positive Selection in the Human Genome. This paper is an extension of the research project that emerges...

posted to
evolgen on
Tue 7th Mar 06This paper is rather timely considering I just finished reviewing methods for detecting natural selection. Jonathan Pritchard's group has scanned SNP data from three populations (Europeans, East Asians, and Nigerians) for signatures of positive natural selection....

posted to
ontogeny on
Wed 8th Mar 06Source: New York Times Providing the strongest evidence yet that humans are still evolving, researchers have detected some 700 regions of the human genome where genes appear to have been reshaped by natural selection, a principal force of evolution, within...

posted to
The Contingency Table on
Thu 4th May 06This months PLoS Genetics has a review on the moleular "footprint" of balancing selection. It's (of course) open access, so click on through. It's easy to forget, in this time when the detection of selective sweeps gets extensive publicity, that there are other...

posted to
The Contingency Table on
Thu 13th Apr 06If you liked RPM's series on detecting natural selection over at Evolgen, you'll enjoy I review I came across from late last year. It's called Molecular Signatures of Natural Selection, by Ramus Nielson. From the abstract: This review provides a nonmathematical...
While I tend to fixate on the human health-related effects of genomics, the ramifications obviously go far beyond my little domain. One such area that is being greatly affected is the detection of natural selection. If you read RPM's series on the subject,...

posted to
Dienekes' Anthropology Blog on
Tue 7th Mar 06Yet another study on positive selection in modern humans; you can find many many more by searching for "recent selection" or "positive selection" via the site search on the right sidebar.The findings are reported in PLoS Biology (free text). Nicholas Wade also...

posted to
Anthropology.net blogs on
Mon 6th Mar 06PloS Biology published "A Map of Recent Positive Selection in the Human Genome" today. This article is a thorough look at roughly 700 regions of the human genome, some of "which [are] responsible for the senses of taste and smell, digestion, bone structure,...
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